TEKT3

Chr 17AR

tektin 3

Also known as: SPGF81

The protein forms filamentous polymers that are incorporated into ciliary and flagellar microtubules and is required for normal sperm motility. Mutations cause spermatogenic failure with autosomal recessive inheritance. This gene shows very low constraint against loss-of-function variants in the general population.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismARLOEUF 1.461 OMIM phenotype
Clinical SummaryTEKT3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.46LOEUF
pLI 0.000
Z-score -0.21
OE 1.05 (0.761.46)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.20Z-score
OE missense 0.97 (0.881.07)
289 obs / 298.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.05 (0.761.46)
00.351.4
Missense OE0.97 (0.881.07)
00.61.4
Synonymous OE0.91
01.21.6
LoF obs/exp: 25 / 23.9Missense obs/exp: 289 / 298.9Syn Z: 0.73
DN
0.77top 25%
GOF
0.7029th %ile
LOF
0.2969th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TEKT3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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