TCTN3

Chr 10AR

tectonic family member 3

Also known as: C10orf61, JBTS18, OFD4, TECT3

This gene encodes a member of the tectonic gene family which functions in Hedgehog signal transduction and development of the neural tube. Mutations in this gene have been associated with Orofaciodigital Syndrome IV and Joubert Syndrom 18. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Sep 2012]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Joubert syndrome 18MIM #614815
AR
Orofaciodigital syndrome IVMIM #258860
AR

Clinical highlights

Gene-disease validity (ClinGen)
ciliopathy · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
1.04
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.04LOEUF
pLI 0.000
Z-score 1.38
OE 0.73 (0.521.04)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.84Z-score
OE missense 0.87 (0.790.96)
273 obs / 314.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.73 (0.521.04)
00.351.4
Missense OE?0.87 (0.790.96)
00.61.4
Synonymous OE?0.96
01.21.6
LoF obs/exp: 22 / 30.2Missense obs/exp: 273 / 314.7Syn Z: 0.38

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TCTN3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.