TCTN1

Chr 12AR

tectonic family member 1

Also known as: JBTS13, TECT1

The protein is a component of the tectonic-like complex that localizes to the transition zone of primary cilia and acts as a barrier preventing diffusion of transmembrane proteins between cilia and plasma membranes, while also regulating Hedgehog signaling required for neural tube patterning. Mutations cause Joubert syndrome 13, a ciliopathy affecting the brain, kidneys, and other organ systems, inherited in an autosomal recessive pattern. The gene shows very high constraint against loss-of-function variants in the population.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.231 OMIM phenotype
Clinical SummaryTCTN1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.23LOEUF
pLI 0.000
Z-score 0.58
OE 0.88 (0.641.23)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.61Z-score
OE missense 0.90 (0.821.00)
282 obs / 312.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.88 (0.641.23)
00.351.4
Missense OE0.90 (0.821.00)
00.61.4
Synonymous OE0.85
01.21.6
LoF obs/exp: 25 / 28.3Missense obs/exp: 282 / 312.1Syn Z: 1.32

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TCTN1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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