TCEAL7

Chr X

transcription elongation factor A like 7

Also known as: WEX5

TCEAL7 encodes a transcriptional repressor that negatively regulates NF-kappa-B signaling, represses cyclin D1 expression, and controls telomerase activity. Mutations cause X-linked intellectual disability with seizures and behavioral abnormalities. This gene follows X-linked inheritance, affecting primarily males with carrier females potentially showing milder symptoms.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
1
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.43
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryTCEAL7
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.00) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.43LOEUF
pLI 0.485
Z-score 1.24
OE 0.00 (0.001.43)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.38Z-score
OE missense 0.83 (0.631.11)
33 obs / 39.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.001.43)
00.351.4
Missense OE0.83 (0.631.11)
00.61.4
Synonymous OE0.85
01.21.6
LoF obs/exp: 0 / 1.8Missense obs/exp: 33 / 39.8Syn Z: 0.41
DN
0.83top 10%
GOF
0.76top 25%
LOF
0.2777th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TCEAL7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗