TBCD

Chr 17AR

tubulin folding cofactor D

Also known as: PEBAT, SSD-1, tfcD

Cofactor D is one of four proteins (cofactors A, D, E, and C) involved in the pathway leading to correctly folded beta-tubulin from folding intermediates. Cofactors A and D are believed to play a role in capturing and stabilizing beta-tubulin intermediates in a quasi-native confirmation. Cofactor E binds to the cofactor D/beta-tubulin complex; interaction with cofactor C then causes the release of beta-tubulin polypeptides that are committed to the native state. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Encephalopathy, progressive, early-onset, with brain atrophy and thin corpus callosumMIM #617193
AR

Clinical highlights

Gene-disease validity (ClinGen)
early-onset progressive diffuse brain atrophy-microcephaly-muscle weakness-optic atrophy syndrome · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
13
Pubs (1 yr)
P/LP submissions
P/LP missense
0.49
LOEUF
LOF
Mechanism· G2P
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GeneReview available — TBCD
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.49LOEUF
pLI 0.000
Z-score 5.11
OE 0.36 (0.260.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.82Z-score
OE missense 0.81 (0.750.86)
573 obs / 709.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.36 (0.260.49)
00.351.4
Missense OE?0.81 (0.750.86)
00.61.4
Synonymous OE?1.01
01.21.6
LoF obs/exp: 26 / 73.1Missense obs/exp: 573 / 709.8Syn Z: -0.18

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TBCD · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.