TBC1D2B

Chr 15

TBC1 domain family member 2B

Also known as: NEDSGO

Predicted to enable GTPase activator activity. Involved in endocytosis. Located in cytosol and early endosome. Implicated in neurodevelopmental disorder with seizures and gingival overgrowth. [provided by Alliance of Genome Resources, Jun 2026]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtNeurodevelopmental disorder with seizures and gingival overgrowth

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.70
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.70LOEUF
pLI 0.000
Z-score 3.09
OE 0.48 (0.340.70)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.82Z-score
OE missense 0.77 (0.710.84)
388 obs / 502.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.48 (0.340.70)
00.351.4
Missense OE?0.77 (0.710.84)
00.61.4
Synonymous OE?1.02
01.21.6
LoF obs/exp: 20 / 41.5Missense obs/exp: 388 / 502.9Syn Z: -0.17

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TBC1D2B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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