TAPT1

Chr 4AR

transmembrane anterior posterior transformation 1

Also known as: CMVFR, OCLSBG

This gene encodes a highly conserved protein that localizes to the centrosome and/or ciliary basal body. Mutations in this gene disrupt Golgi morphology and trafficking and normal primary cilium formation and these mutations are congenitally manifested by severe undermineralization of the intra-uterine skeleton. A mutation in the mouse ortholog of this gene results in homeotic, posterior-to-anterior transformations of the axial skeleton which are similar to the phenotype of mouse homeobox C8 gene mutants. In mouse, this gene is thought to function downstream of homeobox C8 to transduce extracellular patterning information during axial skeleton development. [provided by RefSeq, Jan 2017]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck typeMIM #616897
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
0.56
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.56LOEUF
pLI 0.032
Z-score 3.13
OE 0.30 (0.170.56)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.92Z-score
OE missense 0.65 (0.570.74)
157 obs / 241.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.30 (0.170.56)
00.351.4
Missense OE?0.65 (0.570.74)
00.61.4
Synonymous OE?0.92
01.21.6
LoF obs/exp: 7 / 23.3Missense obs/exp: 157 / 241.0Syn Z: 0.59

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

TAPT1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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