TACC3

Chr 4

transforming acidic coiled-coil containing protein 3

Also known as: ERIC-1, ERIC1, Tacc4, maskin

The protein functions in mitotic spindle stabilization and microtubule-dependent coupling of the nucleus and centrosome, playing a critical role in centrosome-mediated interkinetic nuclear migration of neural progenitors. Mutations cause autosomal recessive microcephaly, seizures, and developmental delay, typically presenting in infancy with severe intellectual disability and cortical malformations. The gene shows relatively low constraint to loss-of-function variation, consistent with its recessive inheritance pattern.

Summary from RefSeq, UniProt
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2
Active trials
53
Pubs (1 yr)
144
P/LP submissions
0%
P/LP missense
0.71
LOEUF
DN
Mechanism· predicted
Clinical SummaryTACC3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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ClinVar Variants
144 unique Pathogenic / Likely Pathogenic· 178 VUS of 382 total submissions
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Clinical Trials
2 active or recruiting trials — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.71LOEUF
pLI 0.000
Z-score 2.94
OE 0.47 (0.320.71)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.79Z-score
OE missense 1.10 (1.021.18)
541 obs / 492.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.47 (0.320.71)
00.351.4
Missense OE1.10 (1.021.18)
00.61.4
Synonymous OE1.22
01.21.6
LoF obs/exp: 17 / 36.1Missense obs/exp: 541 / 492.0Syn Z: -2.52
DN
0.7036th %ile
GOF
0.5953th %ile
LOF
0.3550th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

382 submitted variants in ClinVar

Classification Summary

Pathogenic136
Likely Pathogenic8
VUS178
Likely Benign12
Benign9
136
Pathogenic
8
Likely Pathogenic
178
VUS
12
Likely Benign
9
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
136
0
136
Likely Pathogenic
0
0
8
0
8
VUS
0
163
15
0
178
Likely Benign
0
8
3
1
12
Benign
0
3
3
3
9
Total01741654343

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

TACC3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Literature
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