SYT2

Chr 1

synaptotagmin 2

Also known as: CMS7, CMS7A, CMS7B, MYSPC, SytII

This gene encodes a synaptic vesicle membrane protein. The encoded protein is thought to function as a calcium sensor in vesicular trafficking and exocytosis. Mutations in this gene are associated with myasthenic syndrome, presynaptic, congenital, with or without motor neuropathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMyasthenic syndrome, congenital, 7A, presynaptic, and distal motor neuropathy, autosomal dominant
UniProtMyasthenic syndrome, congenital, 7B, presynaptic, autosomal recessive

Clinical highlights

Gene-disease validity (ClinGen)
congenital myasthenic syndrome 7 · ADModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
10
Pubs (1 yr)
P/LP submissions
P/LP missense
0.29
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.29LOEUF
pLI 0.981
Z-score 3.54
OE 0.06 (0.020.29)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.98Z-score
OE missense 0.65 (0.570.74)
159 obs / 246.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.06 (0.020.29)
00.351.4
Missense OE?0.65 (0.570.74)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 1 / 16.6Missense obs/exp: 159 / 246.4Syn Z: 0.89

ClinVar

No ClinVar data available.

Protein Context — Lollipop Plot

SYT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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