SUV39H1
Chr XSUV39H1 histone lysine methyltransferase
Also known as: H3-K9-HMTase 1, KMT1A, MG44, SUV39H
The encoded protein is a histone methyltransferase that trimethylates lysine 9 of histone H3, resulting in transcriptional gene silencing and heterochromatin formation at pericentric and telomeric regions. Mutations cause an autosomal dominant neurodevelopmental disorder characterized by intellectual disability, developmental delay, and behavioral abnormalities. This gene is highly constrained against loss-of-function variants (pLI = 0.99), indicating that haploinsufficiency is likely not tolerated in the general population.
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Highly LoF-intolerant (top ~10% of genes)
Highly missense-constrained (top ~0.1%)
The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
SUV39H1 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools