SURF1

Chr 9AR

SURF1 cytochrome c oxidase assembly factor

Also known as: CMT4K, MC4DN1, SHY1

This gene encodes a protein localized to the inner mitochondrial membrane and thought to be involved in the biogenesis of the cytochrome c oxidase complex. The protein is a member of the SURF1 family, which includes the related yeast protein SHY1 and rickettsial protein RP733. The gene is located in the surfeit gene cluster, a group of very tightly linked genes that do not share sequence similarity, where it shares a bidirectional promoter with SURF2 on the opposite strand. Defects in this gene are a cause of Leigh syndrome, a severe neurological disorder that is commonly associated with systemic cytochrome c oxidase deficiency. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Charcot-Marie-Tooth disease, type 4KMIM #616684
AR
Mitochondrial complex IV deficiency, nuclear type 1MIM #220110
AR

Clinical highlights

Gene-disease validity (ClinGen)
Leigh syndrome · ARDefinitivesufficient evidence for diagnostic panels2 gene-disease associations curated in total
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
19
Pubs (1 yr)
P/LP submissions
P/LP missense
1.72
LOEUF
LOF
Mechanism· G2P
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GeneReview available — SURF1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.72LOEUF
pLI 0.000
Z-score -0.67
OE 1.19 (0.821.72)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.68Z-score
OE missense 1.15 (1.021.31)
177 obs / 153.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.19 (0.821.72)
00.351.4
Missense OE?1.15 (1.021.31)
00.61.4
Synonymous OE?1.65
01.21.6
LoF obs/exp: 18 / 15.2Missense obs/exp: 177 / 153.3Syn Z: -3.89

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SURF1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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