STT3A

Chr 11ADAR

STT3 oligosaccharyltransferase complex catalytic subunit A

Also known as: CDG1WAD, CDG1WAR, ITM1, STT3-A, TMC

The protein encoded by this gene is a catalytic subunit of the N-oligosaccharyltransferase (OST) complex, which functions in the endoplasmic reticulum to transfer glycan chains to asparagine residues of target proteins. A separate complex containing a similar catalytic subunit with an overlapping function also exists. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2015]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Congenital disorder of glycosylation, type Iw, autosomal dominantMIM #619714
AD
Congenital disorder of glycosylation, type Iw, autosomal recessiveMIM #615596
AR

Clinical highlights

Gene-disease validity (ClinGen)
STT3A-congenital disorder of glycosylation · ARModerateconsider for supplementary testing2 gene-disease associations curated in total
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
32
Pubs (1 yr)
P/LP submissions
P/LP missense
0.49
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Missense constrained — critical functional residues
LoF Constraint?
0.49LOEUF
pLI 0.002
Z-score 4.18
OE 0.31 (0.200.49)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
3.62Z-score
OE missense 0.50 (0.440.56)
205 obs / 411.7 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.31 (0.200.49)
00.351.4
Missense OE?0.50 (0.440.56)
00.61.4
Synonymous OE?0.85
01.21.6
LoF obs/exp: 13 / 42.3Missense obs/exp: 205 / 411.7Syn Z: 1.42

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

STT3A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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