ST6GALNAC5

Chr 1

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

Also known as: SIAT7-E, SIAT7E, ST6GalNAcV

The protein encoded by this gene is a Golgi type II transmembrane glycosyltransferase. The encoded protein catalyzes the transfer of sialic acid to cell surface proteins to modulate cell-cell interactions. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2016]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
11
Pubs (1 yr)
P/LP submissions
P/LP missense
0.61
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.61LOEUF
pLI 0.170
Z-score 2.62
OE 0.27 (0.130.61)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.54Z-score
OE missense 0.89 (0.791.01)
185 obs / 206.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.27 (0.130.61)
00.351.4
Missense OE?0.89 (0.791.01)
00.61.4
Synonymous OE?1.08
01.21.6
LoF obs/exp: 4 / 15.0Missense obs/exp: 185 / 206.9Syn Z: -0.55

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

ST6GALNAC5 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.