ST6GALNAC4

Chr 9

ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4

Also known as: IV, SIAT3-C, SIAT3C, SIAT7-D, SIAT7D, ST6GALNACIV, ST6GalNAc

The encoded sialyltransferase catalyzes the transfer of sialic acid from CMP-sialic acid to GalNAc residues on glycoproteins and glycolipids, forming alpha-2,6-linkages and producing branched disialyl structures essential for proper glycosylation. The extremely low pLI score and elevated LOEUF score indicate this gene is highly tolerant to loss-of-function mutations, suggesting haploinsufficiency is unlikely to cause disease. No specific diseases associated with ST6GALNAC4 mutations are established based on the provided information.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
4
Pubs (1 yr)
43
P/LP submissions
0%
P/LP missense
1.39
LOEUF
Mechanism
Clinical SummaryST6GALNAC4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
40 unique Pathogenic / Likely Pathogenic· 50 VUS of 109 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.39LOEUF
pLI 0.000
Z-score 0.54
OE 0.84 (0.531.39)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.76Z-score
OE missense 0.85 (0.750.96)
174 obs / 204.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.84 (0.531.39)
00.351.4
Missense OE0.85 (0.750.96)
00.61.4
Synonymous OE0.95
01.21.6
LoF obs/exp: 11 / 13.1Missense obs/exp: 174 / 204.7Syn Z: 0.41

ClinVar Variant Classifications

109 submitted variants in ClinVar

Classification Summary

Pathogenic39
Likely Pathogenic1
VUS50
Likely Benign2
Benign2
39
Pathogenic
1
Likely Pathogenic
50
VUS
2
Likely Benign
2
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
39
0
39
Likely Pathogenic
0
0
1
0
1
VUS
0
48
2
0
50
Likely Benign
0
2
0
0
2
Benign
0
0
0
2
2
Total05042294

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

ST6GALNAC4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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