SSTR3

Chr 22

somatostatin receptor 3

Also known as: SS-3-R, SS3-R, SS3R, SSR-28, SST3

This gene encodes somatostatin receptor 3, a G-protein coupled receptor that binds somatostatin-14 and somatostatin-28 peptide hormones and inhibits adenylyl cyclase to regulate neurotransmission, cell proliferation, and hormone secretion. Mutations cause autosomal recessive intellectual disability with seizures and hypotonia. The gene shows low evolutionary constraint, consistent with recessive inheritance patterns where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.42
Clinical SummarySSTR3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
💊
Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.42LOEUF
pLI 0.000
Z-score 0.67
OE 0.76 (0.431.42)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
1.14Z-score
OE missense 0.82 (0.730.91)
247 obs / 303.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.76 (0.431.42)
00.351.4
Missense OE0.82 (0.730.91)
00.61.4
Synonymous OE1.07
01.21.6
LoF obs/exp: 7 / 9.2Missense obs/exp: 247 / 303.0Syn Z: -0.61
DN
0.76top 25%
GOF
0.85top 5%
LOF
0.2775th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SSTR3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
Open Research Assistant →