SRSF11

Chr 1

serine and arginine rich splicing factor 11

Also known as: NET2, SFRS11, dJ677H15.2, p54

This protein may function in pre-mRNA splicing and is highly constrained against loss-of-function variants (pLI 0.998, LOEUF 0.233). No established disease associations have been reported for mutations in this gene.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
5
Pubs (1 yr)
22
P/LP submissions
0%
P/LP missense
0.23
LOEUF· LoF intol.
LOF
Mechanism· predicted
Clinical SummarySRSF11
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
22 unique Pathogenic / Likely Pathogenic· 37 VUS of 90 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.23LOEUF
pLI 0.998
Z-score 4.46
OE 0.07 (0.030.23)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
2.44Z-score
OE missense 0.58 (0.510.67)
159 obs / 272.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios
LoF OE0.07 (0.030.23)
00.351.4
Missense OE0.58 (0.510.67)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 2 / 27.1Missense obs/exp: 159 / 272.3Syn Z: 0.02
DN
0.3097th %ile
GOF
0.4184th %ile
LOF
0.87top 5%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.23

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

90 submitted variants in ClinVar

Classification Summary

Pathogenic22
VUS37
Likely Benign3
22
Pathogenic
37
VUS
3
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
22
0
22
Likely Pathogenic
0
0
0
0
0
VUS
0
33
4
0
37
Likely Benign
0
1
1
1
3
Benign
0
0
0
0
0
Total03427162

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

SRSF11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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