SQSTM1

Chr 5ADAR

sequestosome 1

Also known as: A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL, PDB3, ZIP3

This gene encodes a multifunctional protein that binds ubiquitin and regulates activation of the nuclear factor kappa-B (NF-kB) signaling pathway. The protein functions as a scaffolding/adaptor protein in concert with TNF receptor-associated factor 6 to mediate activation of NF-kB in response to upstream signals. Alternatively spliced transcript variants encoding either the same or different isoforms have been identified for this gene. Mutations in this gene result in sporadic and familial Paget disease of bone. [provided by RefSeq, Mar 2009]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Frontotemporal dementia and/or amyotrophic lateral sclerosis 3MIM #616437
AD
Myopathy, distal, with rimmed vacuolesMIM #617158
AD
Neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onsetMIM #617145
AR
Paget disease of bone 3MIM #167250
AD

Clinical highlights

Gene-disease validity (ClinGen)
frontotemporal dementia and/or amyotrophic lateral sclerosis 3 · ADModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
750
Pubs (1 yr)
P/LP submissions
P/LP missense
0.80
LOEUF
LOF
Mechanism· G2P
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GeneReview available — SQSTM1
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.80LOEUF
pLI 0.001
Z-score 2.18
OE 0.44 (0.260.80)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.94Z-score
OE missense 1.16 (1.061.28)
304 obs / 261.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.44 (0.260.80)
00.351.4
Missense OE?1.16 (1.061.28)
00.61.4
Synonymous OE?1.27
01.21.6
LoF obs/exp: 8 / 18.0Missense obs/exp: 304 / 261.2Syn Z: -2.24

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SQSTM1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.