SPATA46

Chr 1

spermatogenesis associated 46

Also known as: C1orf111, HSD20, TEKT2BP2

Predicted to be involved in fusion of sperm to egg plasma membrane involved in single fertilization and spermatogenesis. Predicted to be active in nuclear membrane. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…
0
Active trials
1
Pubs (1 yr)
P/LP submissions
P/LP missense
1.89
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.89LOEUF
pLI 0.000
Z-score -1.01
OE 1.35 (0.871.89)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.07Z-score
OE missense 1.02 (0.891.16)
153 obs / 150.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.35 (0.871.89)
00.351.4
Missense OE?1.02 (0.891.16)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 13 / 9.6Missense obs/exp: 153 / 150.5Syn Z: 0.07

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SPATA46 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →