SOX11

Chr 2AD

SRY-box transcription factor 11

Also known as: CSS9, IDDMOH, MRD27

This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The protein may function in the developing nervous system and play a role in tumorigenesis. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Intellectual developmental disorder with microcephaly and with or without ocular malformations or hypogonadotropic hypogonadismMIM #615866
AD

Clinical highlights

Gene-disease validity (ClinGen)
SOX11-related complex neurodevelopmental disorder with or without congenital anomalies · ADDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
100
Pubs (1 yr)
P/LP submissions
P/LP missense
0.44
LOEUF
LOF
Mechanism· predicted
📖
GeneReview available — SOX11
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.44LOEUF
pLI 0.858
Z-score 2.76
OE 0.09 (0.030.44)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.26Z-score
OE missense 0.59 (0.520.68)
146 obs / 245.6 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.09 (0.030.44)
00.351.4
Missense OE?0.59 (0.520.68)
00.61.4
Synonymous OE?1.35
01.21.6
LoF obs/exp: 1 / 10.8Missense obs/exp: 146 / 245.6Syn Z: -2.95

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SOX11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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