SOX1

Chr 13

SRY-box transcription factor 1

This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional activator after forming a protein complex with other proteins. In mice, a similar protein regulates the gamma-crystallin genes and is essential for lens development. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
74
Pubs (1 yr)
P/LP submissions
P/LP missense
0.95
LOEUF
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.95LOEUF
pLI 0.623
Z-score 1.63
OE 0.00 (0.000.95)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint?
0.58Z-score
OE missense 0.82 (0.681.00)
71 obs / 86.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.00 (0.000.95)
00.351.4
Missense OE?0.82 (0.681.00)
00.61.4
Synonymous OE?1.40
01.21.6
LoF obs/exp: 0 / 3.1Missense obs/exp: 71 / 86.1Syn Z: -1.96

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SOX1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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