SNAPC4

Chr 9AR

small nuclear RNA activating complex polypeptide 4

Also known as: NEDRSO, PTFalpha, SNAP190

This gene encodes the largest subunit of the small nuclear RNA-activating protein (SNAP) complex. The encoded protein contains a Myb DNA-binding domain, and is essential for RNA polymerase II and III polymerase transcription from small nuclear RNA promoters. A mutation in this gene is associated with ankylosing spondylitis. [provided by RefSeq, Jul 2016]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Neurodevelopmental disorder with motor regression, progressive spastic paraplegia, and oromotor dysfunctionMIM #620515
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
3
Pubs (1 yr)
P/LP submissions
P/LP missense
0.98
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.98LOEUF
pLI 0.000
Z-score 1.71
OE 0.78 (0.620.98)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-1.08Z-score
OE missense 1.10 (1.041.16)
957 obs / 867.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.78 (0.620.98)
00.351.4
Missense OE?1.10 (1.041.16)
00.61.4
Synonymous OE?1.29
01.21.6
LoF obs/exp: 53 / 68.3Missense obs/exp: 957 / 867.8Syn Z: -4.51

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SNAPC4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →