SNAPC3

Chr 9

small nuclear RNA activating complex polypeptide 3

Also known as: PTFbeta, SNAP50

Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nuclear body and nucleolus. [provided by Alliance of Genome Resources, Jul 2025]

OMIMResearchGenerating clinical summary…
0
Active trials
3
Pubs (1 yr)
P/LP submissions
P/LP missense
1.02
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.02LOEUF
pLI 0.000
Z-score 1.50
OE 0.64 (0.421.02)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-1.03Z-score
OE missense 1.20 (1.081.34)
244 obs / 202.7 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.64 (0.421.02)
00.351.4
Missense OE?1.20 (1.081.34)
00.61.4
Synonymous OE?1.18
01.21.6
LoF obs/exp: 13 / 20.3Missense obs/exp: 244 / 202.7Syn Z: -1.22

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SNAPC3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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