SMR3A

Chr 4

submaxillary gland androgen regulated protein 3A

Also known as: P-B1, PBI, PRL5, PROL5

The SMR3A protein is predicted to function as an endopeptidase inhibitor involved in regulating pain perception and may have protective or detoxification roles. Currently, no specific diseases have been definitively associated with mutations in this gene based on the available data. The inheritance pattern for SMR3A-related conditions has not been established.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.73
Clinical SummarySMR3A
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.00) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.73LOEUF
pLI 0.391
Z-score 0.92
OE 0.00 (0.001.73)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.59Z-score
OE missense 1.20 (1.001.44)
84 obs / 70.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.00 (0.001.73)
00.351.4
Missense OE1.20 (1.001.44)
00.61.4
Synonymous OE0.81
01.21.6
LoF obs/exp: 0 / 1.0Missense obs/exp: 84 / 70.1Syn Z: 0.75
DN
0.89top 5%
GOF
0.6051th %ile
LOF
0.11100th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SMR3A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found