SMPX

Chr X

small muscle protein X-linked

Also known as: Chisel, Csl, DFN6, DFNX4, MPD7

This gene encodes a small protein that has no known functional domains. Mutations in this gene are a cause of X-linked deafness-4, and the encoded protein may play a role in the maintenance of inner ear cells subjected to mechanical stress. Alternatively spliced transcript variants have been observed for this gene. [provided by RefSeq, Dec 2011]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtDeafness, X-linked, 4
UniProtMyopathy, distal, 7, adult-onset, X-linked

Clinical highlights

Gene-disease validity (ClinGen)
nonsyndromic genetic hearing loss · XLDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.95
LOEUF
Mechanism
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GeneReview available — SMPX
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.95LOEUF
pLI 0.623
Z-score 1.63
OE 0.00 (0.000.95)
Moderately constrained

Typical tolerance to LoF variation

Missense Constraint?
-0.04Z-score
OE missense 1.02 (0.781.36)
34 obs / 33.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.00 (0.000.95)
00.351.4
Missense OE?1.02 (0.781.36)
00.61.4
Synonymous OE?1.52
01.21.6
LoF obs/exp: 0 / 3.1Missense obs/exp: 34 / 33.3Syn Z: -1.47

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SMPX · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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