SLURP1

Chr 8AR

secreted LY6/PLAUR domain containing 1

Also known as: ANUP, ARS, ArsB, LY6-MT, LY6LS, MDM

This protein maintains the physiological and structural integrity of keratinocyte layers in the skin and modulates nicotinic acetylcholine receptor activity to regulate keratinocyte proliferation and differentiation. Mutations cause Meleda disease, a rare autosomal recessive skin disorder characterized by palmoplantar keratoderma. The gene shows relatively low constraint against loss-of-function variants (pLI 0.26, LOEUF 1.31), consistent with its recessive inheritance pattern.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.311 OMIM phenotype
Clinical SummarySLURP1
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.28) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.31LOEUF
pLI 0.259
Z-score 1.24
OE 0.28 (0.101.31)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.59Z-score
OE missense 0.79 (0.641.00)
52 obs / 65.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.28 (0.101.31)
00.351.4
Missense OE0.79 (0.641.00)
00.61.4
Synonymous OE1.09
01.21.6
LoF obs/exp: 1 / 3.5Missense obs/exp: 52 / 65.5Syn Z: -0.38
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveSLURP1-related palmoplantar keratoderma transgrediens (Mal de Meleda)LOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6356th %ile
GOF
0.6444th %ile
LOF
0.2386th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLURP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC