SLCO1B7

Chr 12

solute carrier organic anion transporter family member 1B7 (putative)

Also known as: LST-3, LST-3TM12, LST3, OATP1B7, SLC21A21

The protein functions as a bile acid and organic anion transporter located in the basolateral plasma membrane. Currently, no pediatric neurological diseases have been definitively associated with mutations in this gene based on available clinical data. The gene shows very low constraint against loss-of-function variants, suggesting that complete loss of function may be well tolerated.

Summary from RefSeq
Research Assistant →
0
Active trials
1
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.74
LOEUF
DN
Mechanism· predicted
Clinical SummarySLCO1B7
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.74LOEUF
pLI 0.000
Z-score -1.50
OE 1.32 (1.001.74)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.96Z-score
OE missense 1.15 (1.061.26)
357 obs / 309.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.32 (1.001.74)
00.351.4
Missense OE1.15 (1.061.26)
00.61.4
Synonymous OE1.23
01.21.6
LoF obs/exp: 34 / 25.8Missense obs/exp: 357 / 309.4Syn Z: -1.85
DN
0.6455th %ile
GOF
0.5954th %ile
LOF
0.3357th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLCO1B7 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC