SLC9A3

Chr 5AR

solute carrier family 9 member A3

Also known as: DIAR8, NHE-3, NHE3

The protein encoded by this gene is an epithelial brush border Na/H exchanger that uses an inward sodium ion gradient to expel acids from the cell. Defects in this gene are a cause of congenital secretory sodium diarrhea. Pseudogenes of this gene exist on chromosomes 10 and 22. [provided by RefSeq, Mar 2016]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Diarrhea 8, secretory sodium, congenitalMIM #616868
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
31
Pubs (1 yr)
P/LP submissions
P/LP missense
0.31
LOEUF· LoF intol.
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.31LOEUF
pLI 0.978
Z-score 4.83
OE 0.16 (0.090.31)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.49Z-score
OE missense 0.69 (0.640.76)
365 obs / 525.7 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.16 (0.090.31)
00.351.4
Missense OE?0.69 (0.640.76)
00.61.4
Synonymous OE?1.17
01.21.6
LoF obs/exp: 6 / 38.2Missense obs/exp: 365 / 525.7Syn Z: -2.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC9A3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →