SLC5A6

Chr 2AR

solute carrier family 5 member 6

Also known as: COMNB, NERIB, SMVT, SMVTD, hSMVT

Enables biotin transmembrane transporter activity; iodide transmembrane transporter activity; and pantothenate transmembrane transporter activity. Involved in iodide transmembrane transport; transport across blood-brain barrier; and vitamin transmembrane transport. Located in apical plasma membrane. Implicated in vitamin metabolic disorder. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Peripheral motor neuropathy, childhood-onset, biotin-responsiveMIM #619903
AR
Sodium-dependent multivitamin transporter deficiencyMIM #618973
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
19
Pubs (1 yr)
P/LP submissions
P/LP missense
0.53
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.53LOEUF
pLI 0.006
Z-score 3.61
OE 0.31 (0.190.53)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.63Z-score
OE missense 0.76 (0.690.84)
291 obs / 380.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.31 (0.190.53)
00.351.4
Missense OE?0.76 (0.690.84)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 10 / 32.0Missense obs/exp: 291 / 380.5Syn Z: 0.21

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC5A6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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