SLC4A4

Chr 4AR

solute carrier family 4 member 4

Also known as: HNBC1, KNBC, NBC1, NBC2, NBCe1, NBCe1-A, PRTAO, SLC4A5

This gene encodes a sodium bicarbonate cotransporter (NBC) involved in the regulation of bicarbonate secretion and absorption and intracellular pH. Mutations in this gene are associated with proximal renal tubular acidosis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]

OMIMResearchGenerating clinical summary…
LOFmechanismARLOEUF 0.271 OMIM phenotype
Clinical SummarySLC4A4
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.27LOEUF
pLI 0.997
Z-score 5.49
OE 0.15 (0.080.27)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
3.14Z-score
OE missense 0.63 (0.580.69)
367 obs / 580.1 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.15 (0.080.27)
00.351.4
Missense OE?0.63 (0.580.69)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 7 / 48.1Missense obs/exp: 367 / 580.1Syn Z: 0.15

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC4A4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →