SLC45A4

Chr 8

solute carrier family 45 member 4

Neuronal polyamine-transporter involved in pain perception (PubMed:40836097). Transports polyamines such as putrescine, cadaverine, spermine and spermidine (PubMed:40836097). Expressed in sensory neuron subtypes within the dorsal root ganglion, where it regulates the excitability of C-polymodal nociceptors by mediating polyamine transport (By similarity)

0
Active trials
6
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.71
LOEUF
Multiple*
Mechanism· predicted
Clinical SummarySLC45A4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.71LOEUF
pLI 0.000
Z-score 2.67
OE 0.43 (0.270.71)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.83Z-score
OE missense 0.90 (0.830.97)
486 obs / 540.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.43 (0.270.71)
00.351.4
Missense OE0.90 (0.830.97)
00.61.4
Synonymous OE1.11
01.21.6
LoF obs/exp: 11 / 25.5Missense obs/exp: 486 / 540.5Syn Z: -1.41
DN
0.78top 25%
GOF
0.7125th %ile
LOF
0.2777th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC45A4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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