SLC39A4

Chr 8

solute carrier family 39 member 4

Also known as: AEZ, AWMS2, ZIP4

This gene encodes a member of the zinc/iron-regulated transporter-like protein (ZIP) family. The encoded protein localizes to cell membranes and is required for zinc uptake in the intestine. Mutations in this gene result in acrodermatitis enteropathica. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2013]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtAcrodermatitis enteropathica, zinc-deficiency type

Clinical highlights

Gene-disease validity (ClinGen)
acrodermatitis enteropathica · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
13
Pubs (1 yr)
P/LP submissions
P/LP missense
0.70
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.70LOEUF
pLI 0.000
Z-score 2.66
OE 0.42 (0.260.70)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.30Z-score
OE missense 1.04 (0.961.13)
412 obs / 395.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.42 (0.260.70)
00.351.4
Missense OE?1.04 (0.961.13)
00.61.4
Synonymous OE?1.33
01.21.6
LoF obs/exp: 10 / 24.1Missense obs/exp: 412 / 395.5Syn Z: -3.75

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC39A4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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