SLC39A4

Chr 8AR

solute carrier family 39 member 4

Also known as: AEZ, AWMS2, ZIP4

This protein functions as a selective zinc transporter that mediates zinc uptake in the intestinal tract, playing an essential role in dietary zinc absorption. Mutations cause acrodermatitis enteropathica, a disorder characterized by zinc deficiency affecting the skin, gastrointestinal system, and immune function. The condition follows autosomal recessive inheritance and typically presents in early infancy.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 0.701 OMIM phenotype
Clinical SummarySLC39A4
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Gene-Disease Validity (ClinGen)
acrodermatitis enteropathica · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.70LOEUF
pLI 0.000
Z-score 2.66
OE 0.42 (0.260.70)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.30Z-score
OE missense 1.04 (0.961.13)
412 obs / 395.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.42 (0.260.70)
00.351.4
Missense OE1.04 (0.961.13)
00.61.4
Synonymous OE1.33
01.21.6
LoF obs/exp: 10 / 24.1Missense obs/exp: 412 / 395.5Syn Z: -3.75
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveSLC39A4-related acrodermatitis enteropathica, zinc deficiency typeLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.75top 25%
GOF
0.77top 25%
LOF
0.2092th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC39A4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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