SLC25A15

Chr 13AR

solute carrier family 25 member 15

Also known as: D13S327, HHH, LNC-HC, ORC1, ORNT1

This gene is a member of the mitochondrial carrier family. The encoded protein transports ornithine across the inner mitochondrial membrane from the cytosol to the mitochondrial matrix. The protein is an essential component of the urea cycle, and functions in ammonium detoxification and biosynthesis of the amino acid arginine. Mutations in this gene result in hyperornithinemia-hyperammonemia-homocitrullinuria (HHH) syndrome. There is a pseudogene of this locus on the Y chromosome.[provided by RefSeq, May 2009]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Hyperornithinemia-hyperammonemia-homocitrullinemia syndromeMIM #238970
AR

Clinical highlights

Gene-disease validity (ClinGen)
ornithine translocase deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
1
Active trials
9
Pubs (1 yr)
P/LP submissions
P/LP missense
1.38
LOEUF
LOF
Mechanism· G2P
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GeneReview available — SLC25A15
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.38LOEUF
pLI 0.000
Z-score 0.56
OE 0.83 (0.521.38)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.10Z-score
OE missense 0.98 (0.861.11)
160 obs / 163.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.83 (0.521.38)
00.351.4
Missense OE?0.98 (0.861.11)
00.61.4
Synonymous OE?1.09
01.21.6
LoF obs/exp: 11 / 13.2Missense obs/exp: 160 / 163.6Syn Z: -0.56

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC25A15 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.