SLC24A3

Chr 20

solute carrier family 24 member 3

Also known as: NCKX3

Plasma membrane sodium/calcium exchangers are an important component of intracellular calcium homeostasis and electrical conduction. Potassium-dependent sodium/calcium exchangers such as SLC24A3 are believed to transport 1 intracellular calcium and 1 potassium ion in exchange for 4 extracellular sodium ions (Kraev et al., 2001 [PubMed 11294880]).[supplied by OMIM, Mar 2008]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
8
Pubs (1 yr)
P/LP submissions
P/LP missense
0.35
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.35LOEUF
pLI 0.879
Z-score 4.39
OE 0.18 (0.100.35)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
2.09Z-score
OE missense 0.70 (0.630.77)
264 obs / 378.3 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.18 (0.100.35)
00.351.4
Missense OE?0.70 (0.630.77)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 6 / 33.3Missense obs/exp: 264 / 378.3Syn Z: 0.08

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC24A3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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