SLC16A8

Chr 22

solute carrier family 16 member 8

Also known as: MCT3, REMP

This protein functions as a retinal pigment epithelium-specific proton-coupled lactate transporter that facilitates lactate and proton transport out of the retina, maintaining pH and ion homeostasis in the outer retina. Mutations cause autosomal recessive retinal dystrophy, affecting vision and retinal function. The gene shows low constraint against loss-of-function variants.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.28
Clinical SummarySLC16A8
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.28LOEUF
pLI 0.009
Z-score 1.08
OE 0.56 (0.281.28)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.93Z-score
OE missense 0.84 (0.750.94)
221 obs / 263.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.56 (0.281.28)
00.351.4
Missense OE0.84 (0.750.94)
00.61.4
Synonymous OE1.02
01.21.6
LoF obs/exp: 4 / 7.1Missense obs/exp: 221 / 263.4Syn Z: -0.19
DN
0.75top 25%
GOF
0.88top 5%
LOF
0.1993th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC16A8 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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