SLC10A2

Chr 13AR

solute carrier family 10 member 2

Also known as: ASBT, IBAT, ISBT, NTCP2, PBAM, PBAM1

This gene encodes a sodium/bile acid cotransporter. This transporter is the primary mechanism for uptake of intestinal bile acids by apical cells in the distal ileum. Bile acids are the catabolic product of cholesterol metabolism, so this protein is also critical for cholesterol homeostasis. Mutations in this gene cause primary bile acid malabsorption (PBAM); muatations in this gene may also be associated with other diseases of the liver and intestines, such as familial hypertriglyceridemia (FHTG). [provided by RefSeq, Mar 2010]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Bile acid malabsorption, primary, 1MIM #613291
AR
0
Active trials
15
Pubs (1 yr)
P/LP submissions
P/LP missense
1.94
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.94LOEUF
pLI 0.000
Z-score -2.02
OE 1.62 (1.111.94)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-2.20Z-score
OE missense 1.43 (1.301.58)
292 obs / 203.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.62 (1.111.94)
00.351.4
Missense OE?1.43 (1.301.58)
00.61.4
Synonymous OE?1.13
01.21.6
LoF obs/exp: 20 / 12.4Missense obs/exp: 292 / 203.5Syn Z: -0.98

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SLC10A2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →