SIGMAR1

Chr 9AR

sigma non-opioid intracellular receptor 1

Also known as: ALS16, DSMA2, HMNR2, OPRS1, S1R, SIG-1R, SR-BP, SR-BP1

This gene encodes a receptor protein that interacts with a variety of psychotomimetic drugs, including cocaine and amphetamines. The receptor is believed to play an important role in the cellular functions of various tissues associated with the endocrine, immune, and nervous systems. As indicated by its previous name, opioid receptor sigma 1 (OPRS1), the product of this gene was erroneously thought to function as an opioid receptor; it is now thought to be a non-opioid receptor. Mutations in this gene has been associated with juvenile amyotrophic lateral sclerosis 16. Alternative splicing of this gene results in transcript variants encoding distinct isoforms. [provided by RefSeq, Aug 2013]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Amyotrophic lateral sclerosis 16, juvenileMIM #614373
AR
?Neuronopathy, distal hereditary motor, autosomal recessive 2MIM #605726
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
43
Pubs (1 yr)
P/LP submissions
P/LP missense
0.74
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.74LOEUF
pLI 0.168
Z-score 2.15
OE 0.28 (0.130.74)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.46Z-score
OE missense 0.64 (0.540.77)
85 obs / 132.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.28 (0.130.74)
00.351.4
Missense OE?0.64 (0.540.77)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 3 / 10.5Missense obs/exp: 85 / 132.3Syn Z: 0.66

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SIGMAR1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.