SHROOM3

Chr 4

shroom family member 3

Also known as: APXL3, MSTP013, SHRM, ShrmL

This gene encodes a PDZ-domain-containing protein that belongs to a family of Shroom-related proteins. This protein may be involved in regulating cell shape in certain tissues. A similar protein in mice is required for proper neurulation. [provided by RefSeq, Jan 2011]

ResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
26
Pubs (1 yr)
P/LP submissions
P/LP missense
0.35
LOEUF
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.35LOEUF
pLI 0.317
Z-score 5.79
OE 0.23 (0.150.35)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.24Z-score
OE missense 0.90 (0.850.94)
1037 obs / 1155.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.23 (0.150.35)
00.351.4
Missense OE?0.90 (0.850.94)
00.61.4
Synonymous OE?0.92
01.21.6
LoF obs/exp: 15 / 65.6Missense obs/exp: 1037 / 1155.6Syn Z: 1.39

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SHROOM3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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