SHROOM1
Chr 5shroom family member 1
Also known as: APXL2
SHROOM family members play diverse roles in the development of the nervous system and other tissues (Hagens et al., 2006 [PubMed 16615870]).[supplied by OMIM, Mar 2008]
ResearchGenerating clinical summary…
Clinical highlights
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
Some data sources returned errors (1)
omim: Error: OMIM fetch failed: 429
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Moderate LoF intolerance
LoF Constraint?
0.54LOEUF
pLI 0.046
Z-score 3.25
OE 0.29 (0.16–0.54)
More LoF-intolerant than ~75% of genes
Missense Constraint?
0.92Z-score
OE missense 0.88 (0.81–0.95)
397 obs / 452.2 exp
Mild missense constraint
Observed / Expected Ratios?
LoF OE?0.29 (0.16–0.54)
0≤0.351.4
Missense OE?0.88 (0.81–0.95)
0≤0.61.4
Synonymous OE?0.82
0≤1.21.6
LoF obs/exp: 7 / 24.3Missense obs/exp: 397 / 452.2Syn Z: 1.99
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
SHROOM1 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools