SHOC2

Chr 10

SHOC2 leucine rich repeat scaffold protein

Also known as: NSLH1, SIAA0862, SOC2, SUR8

This gene encodes a protein that consists almost entirely of leucine-rich repeats, a domain implicated in protein-protein interactions. The protein may function as a scaffold linking RAS to downstream signal transducers in the RAS/ERK MAP kinase signaling cascade. Mutations in this gene have been associated with Noonan-like syndrome with loose anagen hair. [provided by RefSeq, May 2010]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtNoonan syndrome-like disorder with loose anagen hair 1

Clinical highlights

Gene-disease validity (ClinGen)
Noonan syndrome-like disorder with loose anagen hair · ADDefinitivesufficient evidence for diagnostic panels4 gene-disease associations curated in total
Interpreting a novel variant
Gain of function is the curated mechanism (Gene2Phenotype), so a variant that simply removes the protein may not be the pathogenic class here — missense variants in functional domains often carry more weight.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
31
Pubs (1 yr)
P/LP submissions
P/LP missense
0.14
LOEUF· LoF intol.
GOF*
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.14LOEUF
pLI 0.999
Z-score 4.31
OE 0.00 (0.000.14)
Highly constrained

Among the most LoF-intolerant genes (~top 3%)

Missense Constraint?
2.97Z-score
OE missense 0.52 (0.450.59)
153 obs / 296.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.14)
00.351.4
Missense OE?0.52 (0.450.59)
00.61.4
Synonymous OE?0.90
01.21.6
LoF obs/exp: 0 / 21.7Missense obs/exp: 153 / 296.8Syn Z: 0.80

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SHOC2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

VCEP specificationsRASopathyReleased
Specifications ↗Panel ↗

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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