SH3GLB1

Chr 1

SH3 domain containing GRB2 like, endophilin B1

Also known as: Bif-1, CGI-61, PPP1R70, dJ612B15.2

The protein regulates mitochondrial membrane dynamics, autophagy, and apoptotic signaling pathways, and is involved in membrane trafficking and cytokinesis. Mutations cause autosomal recessive spastic paraplegia with childhood onset, characterized by progressive spasticity primarily affecting the lower limbs and intellectual disability. The gene shows significant constraint against loss-of-function variants, suggesting that complete loss of protein function is not well tolerated.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
5
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.24
LOEUF· LoF intol.
Mechanism
Clinical SummarySH3GLB1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.99). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.24LOEUF
pLI 0.994
Z-score 3.90
OE 0.05 (0.020.24)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.63Z-score
OE missense 0.67 (0.580.78)
130 obs / 193.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.05 (0.020.24)
00.351.4
Missense OE0.67 (0.580.78)
00.61.4
Synonymous OE0.84
01.21.6
LoF obs/exp: 1 / 19.7Missense obs/exp: 130 / 193.8Syn Z: 1.01

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SH3GLB1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗