SFTPC

Chr 8AD

surfactant protein C

Also known as: BRICD6, PSP-C, SFTP2, SMDP2, SP-C

This gene encodes the pulmonary-associated surfactant protein C (SPC), an extremely hydrophobic surfactant protein essential for lung function and homeostasis after birth. Pulmonary surfactant is a surface-active lipoprotein complex composed of 90% lipids and 10% proteins which include plasma proteins and apolipoproteins SPA, SPB, SPC and SPD. The surfactant is secreted by the alveolar cells of the lung and maintains the stability of pulmonary tissue by reducing the surface tension of fluids that coat the lung. Multiple mutations in this gene have been identified, which cause pulmonary surfactant metabolism dysfunction type 2, also called pulmonary alveolar proteinosis due to surfactant protein C deficiency, and are associated with interstitial lung disease in older infants, children, and adults. Alternatively spliced transcript variants encoding different protein isoforms have been identified.[provided by RefSeq, Feb 2010]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Surfactant metabolism dysfunction, pulmonary, 2MIM #610913
AD
UniProtPulmonary surfactant metabolism dysfunction 2

Clinical highlights

Gene-disease validity (ClinGen)
SFTPC-related interstitial lung disease · ADDefinitivesufficient evidence for diagnostic panels
1
Active trials
93
Pubs (1 yr)
P/LP submissions
P/LP missense
1.25
LOEUF
Multiple*
Mechanism· predicted
📖
GeneReview available — SFTPC
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.25LOEUF
pLI 0.001
Z-score 1.04
OE 0.64 (0.351.25)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.85Z-score
OE missense 0.78 (0.660.93)
90 obs / 115.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.64 (0.351.25)
00.351.4
Missense OE?0.78 (0.660.93)
00.61.4
Synonymous OE?1.19
01.21.6
LoF obs/exp: 6 / 9.4Missense obs/exp: 90 / 115.7Syn Z: -1.02

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SFTPC · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.