SEZ6L

Chr 22

seizure related 6 homolog like

Also known as: SEZ6L1

The SEZ6L protein contributes to specialized endoplasmic reticulum functions in neurons and is predicted to be involved in synapse maturation and cerebellar Purkinje cell development. Mutations cause autosomal recessive neurodevelopmental disorders affecting the cerebellum and movement. The gene shows significant constraint against loss-of-function variants (LOEUF 0.37), suggesting intolerance to protein disruption.

OMIMResearchSummary from RefSeq, UniProt
GOFmechanismLOEUF 0.37
Clinical SummarySEZ6L
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.51) — some intolerance to loss-of-function variants.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.37LOEUF
pLI 0.507
Z-score 4.90
OE 0.22 (0.130.37)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.47Z-score
OE missense 0.83 (0.770.90)
495 obs / 595.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.22 (0.130.37)
00.351.4
Missense OE0.83 (0.770.90)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 10 / 45.7Missense obs/exp: 495 / 595.9Syn Z: -0.09
DN
0.5966th %ile
GOF
0.6930th %ile
LOF
0.4726th %ile

The highest-scoring mechanism for this gene is gain-of-function.

GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SEZ6L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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