SERPINF2

Chr 17AR

serpin family F member 2

Also known as: A2AP, AAP, ALPHA-2-PI, API, PLI, alpha2AP

This protein is a serine protease inhibitor that serves as the major inhibitor of plasmin, thereby regulating fibrin degradation and blood clotting. Mutations cause alpha-2-plasmin inhibitor deficiency, an autosomal recessive bleeding disorder characterized by severe hemorrhagic diathesis due to impaired regulation of the coagulation pathway. The gene shows tolerance to loss-of-function variants (low pLI), consistent with the recessive inheritance pattern where heterozygous carriers are typically unaffected.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismARLOEUF 0.631 OMIM phenotype
Clinical SummarySERPINF2
🧬
Gene-Disease Validity (ClinGen)
alpha-2-plasmin inhibitor deficiency · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.33) despite low pLI — interpret in context.
💊
Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.63LOEUF
pLI 0.014
Z-score 2.83
OE 0.33 (0.190.63)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.23Z-score
OE missense 0.80 (0.710.89)
229 obs / 287.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.33 (0.190.63)
00.351.4
Missense OE0.80 (0.710.89)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 7 / 21.0Missense obs/exp: 229 / 287.8Syn Z: -0.13
DN
0.7327th %ile
GOF
0.73top 25%
LOF
0.1994th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SERPINF2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
Open Research Assistant →