SERAC1

Chr 6AR

serine active site containing 1

This gene encodes a phosphatidylglycerol remodeling protein located at mitochondria-endoplasmic reticulum interfaces that mediates phospholipid exchange and is essential for mitochondrial function and intracellular cholesterol trafficking. Biallelic mutations cause 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (MEGDEL), inherited in an autosomal recessive pattern. The pathogenesis involves loss of protein function leading to disrupted mitochondrial metabolism and energy production.

GeneReviewsOMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 0.631 OMIM phenotype
Clinical SummarySERAC1
🧬
Gene-Disease Validity (ClinGen)
Leigh syndrome · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📖
GeneReview available — SERAC1
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.63LOEUF
pLI 0.000
Z-score 3.39
OE 0.41 (0.280.63)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.49Z-score
OE missense 0.78 (0.700.86)
278 obs / 357.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.41 (0.280.63)
00.351.4
Missense OE0.78 (0.700.86)
00.61.4
Synonymous OE0.83
01.21.6
LoF obs/exp: 16 / 38.8Missense obs/exp: 278 / 357.3Syn Z: 1.49
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveSERAC1-related 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndromeLOFAR

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6358th %ile
GOF
0.6053th %ile
LOF
0.2777th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SERAC1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC