SCRN2

Chr 17

secernin 2

Also known as: Ses2

The protein is predicted to function as a cysteine-type exopeptidase and dipeptidase involved in proteolysis. Currently, no specific diseases have been definitively associated with SCRN2 mutations in the pediatric population. The gene shows tolerance to loss-of-function mutations based on population genetics data, suggesting haploinsufficiency may not be a primary disease mechanism.

Summary from RefSeq
0
Active trials
3
Pubs (1 yr)
8
P/LP submissions
0%
P/LP missense
1.39
LOEUF
Mechanism
Clinical SummarySCRN2
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
8 unique Pathogenic / Likely Pathogenic· 84 VUS of 112 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.39LOEUF
pLI 0.000
Z-score 0.25
OE 0.94 (0.651.39)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.22Z-score
OE missense 0.96 (0.871.07)
251 obs / 260.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.94 (0.651.39)
00.351.4
Missense OE0.96 (0.871.07)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 18 / 19.2Missense obs/exp: 251 / 260.9Syn Z: -0.06

ClinVar Variant Classifications

112 submitted variants in ClinVar

Classification Summary

Pathogenic7
Likely Pathogenic1
VUS84
Likely Benign7
7
Pathogenic
1
Likely Pathogenic
84
VUS
7
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
7
0
7
Likely Pathogenic
0
0
1
0
1
VUS
0
81
3
0
84
Likely Benign
0
7
0
0
7
Benign
0
0
0
0
0
Total08811099

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

SCRN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found