SBF2

Chr 11

SET binding factor 2

Also known as: CMT4B2, DENND7B, MTMR13

This gene encodes a pseudophosphatase and member of the myotubularin-related protein family. This gene maps within the CMT4B2 candidate region of chromosome 11p15 and mutations in this gene have been associated with Charcot-Marie-Tooth Disease, type 4B2. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtCharcot-Marie-Tooth disease, demyelinating, type 4B2

Clinical highlights

Gene-disease validity (ClinGen)
Charcot-Marie-Tooth disease type 4B2 · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
14
Pubs (1 yr)
P/LP submissions
P/LP missense
0.47
LOEUF
LOF
Mechanism· G2P
📖
GeneReview available — SBF2
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.47LOEUF
pLI 0.000
Z-score 5.98
OE 0.35 (0.270.47)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.19Z-score
OE missense 0.89 (0.840.94)
849 obs / 952.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.35 (0.270.47)
00.351.4
Missense OE?0.89 (0.840.94)
00.61.4
Synonymous OE?1.06
01.21.6
LoF obs/exp: 35 / 99.3Missense obs/exp: 849 / 952.4Syn Z: -0.87

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

SBF2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →