S100P

Chr 4

S100 calcium binding protein P

Also known as: MIG9

The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes include at least 13 members which are located as a cluster on chromosome 1q21; however, this gene is located at 4p16. This protein, in addition to binding Ca2+, also binds Zn2+ and Mg2+. This protein may play a role in the etiology of prostate cancer. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…
1
Active trials
71
Pubs (1 yr)
P/LP submissions
P/LP missense
1.82
LOEUF
Multiple*
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.82LOEUF
pLI 0.033
Z-score 0.29
OE 0.80 (0.311.82)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.38Z-score
OE missense 1.14 (0.931.41)
63 obs / 55.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.80 (0.311.82)
00.351.4
Missense OE?1.14 (0.931.41)
00.61.4
Synonymous OE?0.93
01.21.6
LoF obs/exp: 2 / 2.5Missense obs/exp: 63 / 55.1Syn Z: 0.28

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

S100P · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.