S100B

Chr 21

S100 calcium binding protein B

Also known as: NEF, S100, S100-B, S100beta

The protein encoded by this gene is a member of the S100 family of proteins containing 2 EF-hand calcium-binding motifs. S100 proteins are localized in the cytoplasm and/or nucleus of a wide range of cells, and involved in the regulation of a number of cellular processes such as cell cycle progression and differentiation. S100 genes include at least 13 members which are located as a cluster on chromosome 1q21; however, this gene is located at 21q22.3. This protein may function in Neurite extension, proliferation of melanoma cells, stimulation of Ca2+ fluxes, inhibition of PKC-mediated phosphorylation, astrocytosis and axonal proliferation, and inhibition of microtubule assembly. Chromosomal rearrangements and altered expression of this gene have been implicated in several neurological, neoplastic, and other types of diseases, including Alzheimer's disease, Down's syndrome, epilepsy, amyotrophic lateral sclerosis, melanoma, and type I diabetes. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…
1
Active trials
463
Pubs (1 yr)
P/LP submissions
P/LP missense
1.73
LOEUF
Multiple*
Mechanism· predicted
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GeneReview available — S100B
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.73LOEUF
pLI 0.044
Z-score 0.55
OE 0.66 (0.261.73)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.40Z-score
OE missense 0.84 (0.661.09)
43 obs / 51.0 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.66 (0.261.73)
00.351.4
Missense OE?0.84 (0.661.09)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 2 / 3.0Missense obs/exp: 43 / 51.0Syn Z: 0.38

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

S100B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.