RTN2

Chr 19

reticulon 2

Also known as: HMNR11, NSP2, NSPL1, NSPLI, SPG12

This gene belongs to the family of reticulon encoding genes. Reticulons are associated with the endoplasmic reticulum, and are involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells. Reticulon proteins also play an important role in the replication of positive-strand RNA (ssRNA) viruses. Mutations at this locus have been associated with autosomal dominant spastic paraplegia-12. [provided by RefSeq, Aug 2020]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtSpastic paraplegia 12, autosomal dominant
UniProtNeuronopathy, distal hereditary motor, autosomal recessive 11, with spasticity

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
4
Pubs (1 yr)
P/LP submissions
P/LP missense
0.42
LOEUF
Multiple*
Mechanism· predicted
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GeneReview available — RTN2
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.42LOEUF
pLI 0.416
Z-score 4.05
OE 0.22 (0.130.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.70Z-score
OE missense 0.89 (0.810.98)
306 obs / 342.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.22 (0.130.42)
00.351.4
Missense OE?0.89 (0.810.98)
00.61.4
Synonymous OE?0.93
01.21.6
LoF obs/exp: 7 / 31.5Missense obs/exp: 306 / 342.5Syn Z: 0.72

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RTN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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