RTN2
Chr 19ARADreticulon 2
Also known as: HMNR11, NSP2, NSPL1, NSPLI, SPG12
The RTN2 protein localizes to the endoplasmic reticulum where it inhibits amyloid precursor protein processing and enhances trafficking of transporters including glutamate and glucose transporters to the cell surface. Mutations cause either autosomal dominant spastic paraplegia-12 or autosomal recessive distal hereditary motor neuronopathy with spasticity, both affecting motor neurons and causing progressive spasticity. The gene shows moderate constraint against loss-of-function variants (LOEUF 0.417), and the differing inheritance patterns suggest distinct pathogenic mechanisms for different mutation types.
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
More LoF-intolerant than ~75% of genes
Mild missense constraint
This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and loss-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.
Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.
Literature Evidence
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
RTN2 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools