RSL1D1

Chr 16

ribosomal L1 domain containing 1

Also known as: CSIG, Cic1, L12, PBK1, UTP30

RSL1D1 encodes a protein that binds mRNA and regulates cellular senescence by inhibiting PTEN translation, while also functioning as a pro-apoptotic regulator during DNA damage responses. Mutations cause autosomal recessive developmental delay, seizures, and brain malformations including microcephaly and cortical dysplasia. The gene shows no constraint against loss-of-function variants, consistent with recessive inheritance where heterozygous carriers are unaffected.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.00
Clinical SummaryRSL1D1
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.00LOEUF
pLI 0.000
Z-score 1.54
OE 0.63 (0.411.00)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-1.61Z-score
OE missense 1.29 (1.171.41)
325 obs / 252.9 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.63 (0.411.00)
00.351.4
Missense OE1.29 (1.171.41)
00.61.4
Synonymous OE1.41
01.21.6
LoF obs/exp: 13 / 20.6Missense obs/exp: 325 / 252.9Syn Z: -3.16
DN
0.6162th %ile
GOF
0.3689th %ile
LOF
0.4038th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

RSL1D1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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